No. words: 1212; after pruning: 1186


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:434)  420  0.00 0.00 0.00  MoSU008F_E12_BF482530Ld06P005C06C121F1_088.ab1        1   435 (165)  C MoSU008R_E12_BF482530Ld06P005C06C121R1_088.ab1   (177)   435     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C MoSU008R_E12_BF482530Ld06P005C06C121R1_088.ab1   612 
  373    MoSU008F_E12_BF482530Ld06P005C06C121F1_088.ab1   196 
  381  C MoSU008R_E12_BF482530Ld06P005C06C121R1_088.ab1   232 
  461    MoSU008F_E12_BF482530Ld06P005C06C121F1_088.ab1   284 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0