No. words: 1166; after pruning: 1140


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.3 (1,1:418)  402  0.00 0.00 0.00  MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1        1   417 (161)  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1   (169)   419     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1   588 
  309    MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1   140 
  325  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1   264 
  333    MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1   164 
  369  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1   220 
  381    MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1   212 
  405  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1   184 
  437    MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1   268 
  449  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1   140 
  481    MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1   312 
  501  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1    88 
  509    MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1   340 
  513  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1    76 
  521    MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1   352 
  533  C MoSU008R_F12_BF482530Ld07P005C06C121R1_086.ab1    56 
  541    MoSU008F_F12_BF482530Ld07P005C06C121F1_086.ab1   372 
Contig length: old 747, new 747

Contig length: old 747, new 747
New start: 0