No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:433)  416  0.00 0.23 0.00  MoSU008F_G12_BF482530Ld08P005C06C121F1_084.ab1        1   434 (149)  C MoSU008R_G12_BF482530Ld08P005C06C121R1_084.ab1   (175)   435     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C MoSU008R_G12_BF482530Ld08P005C06C121R1_084.ab1   610 
  211    MoSU008F_G12_BF482530Ld08P005C06C121F1_084.ab1    35 
  215  C MoSU008R_G12_BF482530Ld08P005C06C121R1_084.ab1   396 
  235    MoSU008F_G12_BF482530Ld08P005C06C121F1_084.ab1    59 
  243  C MoSU008R_G12_BF482530Ld08P005C06C121R1_084.ab1   368 
  255    MoSU008F_G12_BF482530Ld08P005C06C121F1_084.ab1    79 
  259  C MoSU008R_G12_BF482530Ld08P005C06C121R1_084.ab1   352 
  263    MoSU008F_G12_BF482530Ld08P005C06C121F1_084.ab1    87 
  303  C MoSU008R_G12_BF482530Ld08P005C06C121R1_084.ab1   308 
  319    MoSU008F_G12_BF482530Ld08P005C06C121F1_084.ab1   143 
  327  C MoSU008R_G12_BF482530Ld08P005C06C121R1_084.ab1   284 
  335    MoSU008F_G12_BF482530Ld08P005C06C121F1_084.ab1   159 
  379  C MoSU008R_G12_BF482530Ld08P005C06C121R1_084.ab1   232 
  459    MoSU008F_G12_BF482530Ld08P005C06C121F1_084.ab1   283 
Contig length: old 759, new 759

Contig length: old 759, new 759
New start: 0