No. words: 1106; after pruning: 1080


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:747)  340  0.84 0.00 0.00  MoSU013F_H10_BF482781Ld10P018H02P018H081F1_066.ab1      296   653 (0)  C MoSU013R_H10_BF482781Ld10P018H02P018H081R1_066.ab1   (0)   453    96 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1    MoSU013F_H10_BF482781Ld10P018H02P018H081F1_066.ab1     1 
  414  C MoSU013R_H10_BF482781Ld10P018H02P018H081R1_066.ab1   335 
  418    MoSU013F_H10_BF482781Ld10P018H02P018H081F1_066.ab1   418 
  438  C MoSU013R_H10_BF482781Ld10P018H02P018H081R1_066.ab1   311 
  450    MoSU013F_H10_BF482781Ld10P018H02P018H081F1_066.ab1   450 
  550  C MoSU013R_H10_BF482781Ld10P018H02P018H081R1_066.ab1   199 
  554    MoSU013F_H10_BF482781Ld10P018H02P018H081F1_066.ab1   554 
  570  C MoSU013R_H10_BF482781Ld10P018H02P018H081R1_066.ab1   179 
Contig length: old 748, new 748

Contig length: old 748, new 748
New start: 0