No. words: 1236; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.3 (1,1:460)  446  0.00 0.00 0.00  MoSU007F_B02_BF485102Ld04P015F01F071F1_014.ab1        1   459 (168)  C MoSU007R_B02_BF485102Ld04P015F01F071R1_014.ab1   (148)   461     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C MoSU007R_B02_BF485102Ld04P015F01F071R1_014.ab1   609 
  212    MoSU007F_B02_BF485102Ld04P015F01F071F1_014.ab1    64 
  216  C MoSU007R_B02_BF485102Ld04P015F01F071R1_014.ab1   394 
  492    MoSU007F_B02_BF485102Ld04P015F01F071F1_014.ab1   344 
  500  C MoSU007R_B02_BF485102Ld04P015F01F071R1_014.ab1   110 
  540    MoSU007F_B02_BF485102Ld04P015F01F071F1_014.ab1   392 
  552  C MoSU007R_B02_BF485102Ld04P015F01F071R1_014.ab1    58 
  556    MoSU007F_B02_BF485102Ld04P015F01F071F1_014.ab1   408 
  560  C MoSU007R_B02_BF485102Ld04P015F01F071R1_014.ab1    50 
  564    MoSU007F_B02_BF485102Ld04P015F01F071F1_014.ab1   416 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0