No. words: 1028; after pruning: 1002


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.2 (1,1:357)  350  0.00 0.00 0.28  MoSU007F_F02_BF485102Ld08P015F01F071F1_006.ab1        1   355 (168)  C MoSU007R_F02_BF485102Ld08P015F01F071R1_006.ab1   (148)   357     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C MoSU007R_F02_BF485102Ld08P015F01F071R1_006.ab1   505 
  396    MoSU007F_F02_BF485102Ld08P015F01F071F1_006.ab1   248 
  404  C MoSU007R_F02_BF485102Ld08P015F01F071R1_006.ab1   102 
  412    MoSU007F_F02_BF485102Ld08P015F01F071F1_006.ab1   264 
  420  C MoSU007R_F02_BF485102Ld08P015F01F071R1_006.ab1    86 
  432    MoSU007F_F02_BF485102Ld08P015F01F071F1_006.ab1   284 
Contig length: old 670, new 671

Contig length: old 671, new 671
New start: 0