No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.5 (1,1:353)  325  0.00 0.28 0.28  MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1        1   351 (169)  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1   (172)   354     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1   526 
  219    MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1    46 
  223  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1   304 
  307    MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1   134 
  315  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1   212 
  343    MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1   170 
  359  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1   168 
  395    MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1   222 
  419  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1   108 
  427    MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1   254 
  431  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1    96 
  435    MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1   262 
  459  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1    68 
  463    MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1   290 
  479  C MoSU035R_G09_BF485253Ld01P019E04P019E101R1_067.ab1    48 
  483    MoSU035F_G09_BF485253Ld01P019E04P019E101F1_067.ab1   310 
Contig length: old 692, new 693

Contig length: old 693, new 693
New start: 0