No. words: 1021; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:339)  314  0.00 0.29 0.29  MoSU035F_B10_BF485253Ld04P019E04P019E101F1_078.ab1        1   340 (180)  C MoSU035R_B10_BF485253Ld04P019E04P019E101R1_078.ab1   (161)   340     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C MoSU035R_B10_BF485253Ld04P019E04P019E101R1_078.ab1   501 
  212    MoSU035F_B10_BF485253Ld04P019E04P019E101F1_078.ab1    50 
  216  C MoSU035R_B10_BF485253Ld04P019E04P019E101R1_078.ab1   286 
  336    MoSU035F_B10_BF485253Ld04P019E04P019E101F1_078.ab1   174 
  344  C MoSU035R_B10_BF485253Ld04P019E04P019E101R1_078.ab1   158 
  384    MoSU035F_B10_BF485253Ld04P019E04P019E101F1_078.ab1   222 
  412  C MoSU035R_B10_BF485253Ld04P019E04P019E101R1_078.ab1    90 
  428    MoSU035F_B10_BF485253Ld04P019E04P019E101F1_078.ab1   266 
Contig length: old 681, new 682

Contig length: old 682, new 682
New start: 0