No. words: 1016; after pruning: 990


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:340)  316  0.00 0.00 0.29  MoSU035F_C10_BF485253Ld05P019E04P019E101F1_076.ab1        1   341 (173)  C MoSU035R_C10_BF485253Ld05P019E04P019E101R1_076.ab1   (162)   340     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C MoSU035R_C10_BF485253Ld05P019E04P019E101R1_076.ab1   502 
  275    MoSU035F_C10_BF485253Ld05P019E04P019E101F1_076.ab1   113 
  287  C MoSU035R_C10_BF485253Ld05P019E04P019E101R1_076.ab1   216 
  311    MoSU035F_C10_BF485253Ld05P019E04P019E101F1_076.ab1   149 
  347  C MoSU035R_C10_BF485253Ld05P019E04P019E101R1_076.ab1   156 
  391    MoSU035F_C10_BF485253Ld05P019E04P019E101F1_076.ab1   229 
  411  C MoSU035R_C10_BF485253Ld05P019E04P019E101R1_076.ab1    92 
  419    MoSU035F_C10_BF485253Ld05P019E04P019E101F1_076.ab1   257 
  431  C MoSU035R_C10_BF485253Ld05P019E04P019E101R1_076.ab1    72 
  435    MoSU035F_C10_BF485253Ld05P019E04P019E101F1_076.ab1   273 
Contig length: old 675, new 676

Contig length: old 676, new 676
New start: 0