No. words: 1022; after pruning: 996


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.6 (1,1:339)  319  0.00 0.29 0.00  MoSU035F_D10_BF485253Ld06P019E04P019E101F1_074.ab1        1   340 (180)  C MoSU035R_D10_BF485253Ld06P019E04P019E101R1_074.ab1   (161)   341     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C MoSU035R_D10_BF485253Ld06P019E04P019E101R1_074.ab1   502 
  302    MoSU035F_D10_BF485253Ld06P019E04P019E101F1_074.ab1   140 
  350  C MoSU035R_D10_BF485253Ld06P019E04P019E101R1_074.ab1   153 
  378    MoSU035F_D10_BF485253Ld06P019E04P019E101F1_074.ab1   216 
  458  C MoSU035R_D10_BF485253Ld06P019E04P019E101R1_074.ab1    45 
  462    MoSU035F_D10_BF485253Ld06P019E04P019E101F1_074.ab1   300 
  466  C MoSU035R_D10_BF485253Ld06P019E04P019E101R1_074.ab1    37 
  470    MoSU035F_D10_BF485253Ld06P019E04P019E101F1_074.ab1   308 
Contig length: old 682, new 682

Contig length: old 682, new 682
New start: 0