No. words: 1015; after pruning: 989


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.8 (1,1:339)  311  0.00 0.00 0.59  MoSU035F_F10_BF485253Ld08P019E04P019E101F1_070.ab1        1   341 (173)  C MoSU035R_F10_BF485253Ld08P019E04P019E101R1_070.ab1   (162)   339     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C MoSU035R_F10_BF485253Ld08P019E04P019E101R1_070.ab1   501 
  279    MoSU035F_F10_BF485253Ld08P019E04P019E101F1_070.ab1   117 
  307  C MoSU035R_F10_BF485253Ld08P019E04P019E101R1_070.ab1   195 
  315    MoSU035F_F10_BF485253Ld08P019E04P019E101F1_070.ab1   153 
  351  C MoSU035R_F10_BF485253Ld08P019E04P019E101R1_070.ab1   151 
  371    MoSU035F_F10_BF485253Ld08P019E04P019E101F1_070.ab1   209 
  379  C MoSU035R_F10_BF485253Ld08P019E04P019E101R1_070.ab1   123 
  395    MoSU035F_F10_BF485253Ld08P019E04P019E101F1_070.ab1   233 
  411  C MoSU035R_F10_BF485253Ld08P019E04P019E101R1_070.ab1    91 
  419    MoSU035F_F10_BF485253Ld08P019E04P019E101F1_070.ab1   257 
Contig length: old 675, new 676

Contig length: old 676, new 676
New start: 0