No. words: 1045; after pruning: 1019


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.8 (1,1:353)  325  0.00 0.28 0.28  MoSU035F_G10_BF485253Ld09P019E04P019E101F1_068.ab1        1   351 (169)  C MoSU035R_G10_BF485253Ld09P019E04P019E101R1_068.ab1   (171)   354     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C MoSU035R_G10_BF485253Ld09P019E04P019E101R1_068.ab1   525 
  290    MoSU035F_G10_BF485253Ld09P019E04P019E101F1_068.ab1   118 
  310  C MoSU035R_G10_BF485253Ld09P019E04P019E101R1_068.ab1   216 
  350    MoSU035F_G10_BF485253Ld09P019E04P019E101F1_068.ab1   178 
  362  C MoSU035R_G10_BF485253Ld09P019E04P019E101R1_068.ab1   164 
  390    MoSU035F_G10_BF485253Ld09P019E04P019E101F1_068.ab1   218 
  402  C MoSU035R_G10_BF485253Ld09P019E04P019E101R1_068.ab1   124 
  406    MoSU035F_G10_BF485253Ld09P019E04P019E101F1_068.ab1   234 
  434  C MoSU035R_G10_BF485253Ld09P019E04P019E101R1_068.ab1    92 
  438    MoSU035F_G10_BF485253Ld09P019E04P019E101F1_068.ab1   266 
  458  C MoSU035R_G10_BF485253Ld09P019E04P019E101R1_068.ab1    68 
  462    MoSU035F_G10_BF485253Ld09P019E04P019E101F1_068.ab1   290 
  494  C MoSU035R_G10_BF485253Ld09P019E04P019E101R1_068.ab1    32 
  498    MoSU035F_G10_BF485253Ld09P019E04P019E101F1_068.ab1   326 
Contig length: old 691, new 692

Contig length: old 692, new 692
New start: 0