No. words: 1038; after pruning: 1012


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:339)  319  0.00 0.29 0.00  MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1        1   340 (175)  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1   (182)   341     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1   523 
  229    MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1    46 
  237  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1   287 
  245    MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1    62 
  249  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1   275 
  285    MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1   102 
  297  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1   227 
  305    MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1   122 
  373  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1   151 
  401    MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1   218 
  405  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1   119 
  421    MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1   238 
  453  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1    71 
  465    MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1   282 
  489  C MoSU035R_H10_BF485253Ld10P019E04P019E101R1_066.ab1    35 
  493    MoSU035F_H10_BF485253Ld10P019E04P019E101F1_066.ab1   310 
Contig length: old 698, new 698

Contig length: old 698, new 698
New start: 0