No. words: 1724; after pruning: 1670


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:1035)  662  0.58 0.00 0.00  MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1      186   873 (0)  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   (0)   851   164 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1     1 
  306  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   731 
  314    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1   314 
  386  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   651 
  390    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1   390 
  398  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   639 
  402    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1   402 
  434  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   603 
  470    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1   470 
  474  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   563 
  531    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1   531 
  555  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   482 
  571    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1   571 
  599  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   438 
  611    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1   611 
  627  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   410 
  643    MoSU034F_D05_BF485401As02P019A02P019A081F1_041.ab1   643 
  655  C MoSU034R_D05_BF485401As02P019A02P019A081R1_041.ab1   382 
Contig length: old 1036, new 1036

Contig length: old 1036, new 1036
New start: 0