No. words: 1714; after pruning: 1660


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:1198)  479  0.97 0.00 0.00  MoSU034F_E05_BF485401At01P019A02P019A081F1_039.ab1      439   953 (0)  C MoSU034R_E05_BF485401At01P019A02P019A081R1_039.ab1   (0)   761   247 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1    MoSU034F_E05_BF485401At01P019A02P019A081F1_039.ab1     1 
  677  C MoSU034R_E05_BF485401At01P019A02P019A081R1_039.ab1   523 
  689    MoSU034F_E05_BF485401At01P019A02P019A081F1_039.ab1   689 
  701  C MoSU034R_E05_BF485401At01P019A02P019A081R1_039.ab1   499 
  721    MoSU034F_E05_BF485401At01P019A02P019A081F1_039.ab1   721 
  729  C MoSU034R_E05_BF485401At01P019A02P019A081R1_039.ab1   471 
  759    MoSU034F_E05_BF485401At01P019A02P019A081F1_039.ab1   759 
  763  C MoSU034R_E05_BF485401At01P019A02P019A081R1_039.ab1   437 
  823    MoSU034F_E05_BF485401At01P019A02P019A081F1_039.ab1   823 
  827  C MoSU034R_E05_BF485401At01P019A02P019A081R1_039.ab1   373 
Contig length: old 1199, new 1199

Contig length: old 1199, new 1199
New start: 0 
S Change at: 146; seg lengths: entry 1, contig 1