No. words: 1467; after pruning: 1413


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.2 (1,1:1175)  250  3.09 0.00 0.00  MoSU034F_F05_BF485401At02P019A02P019A081F1_037.ab1      618   908 (0)  C MoSU034R_F05_BF485401At02P019A02P019A081R1_037.ab1   (0)   559   269 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  126 nodes

 65 str. conn. components

Path
    1    MoSU034F_F05_BF485401At02P019A02P019A081F1_037.ab1     1 
  673  C MoSU034R_F05_BF485401At02P019A02P019A081R1_037.ab1   504 
  685    MoSU034F_F05_BF485401At02P019A02P019A081F1_037.ab1   685 
  721  C MoSU034R_F05_BF485401At02P019A02P019A081R1_037.ab1   456 
  729    MoSU034F_F05_BF485401At02P019A02P019A081F1_037.ab1   729 
  733  C MoSU034R_F05_BF485401At02P019A02P019A081R1_037.ab1   444 
  745    MoSU034F_F05_BF485401At02P019A02P019A081F1_037.ab1   745 
  768  C MoSU034R_F05_BF485401At02P019A02P019A081R1_037.ab1   409 
  788    MoSU034F_F05_BF485401At02P019A02P019A081F1_037.ab1   788 
  796  C MoSU034R_F05_BF485401At02P019A02P019A081R1_037.ab1   381 
  849    MoSU034F_F05_BF485401At02P019A02P019A081F1_037.ab1   849 
  853  C MoSU034R_F05_BF485401At02P019A02P019A081R1_037.ab1   324 
  857    MoSU034F_F05_BF485401At02P019A02P019A081F1_037.ab1   857 
  861  C MoSU034R_F05_BF485401At02P019A02P019A081R1_037.ab1   316 
Contig length: old 1176, new 1176

Contig length: old 1176, new 1176
New start: 0 
S Change at: 144; seg lengths: entry 1, contig 1
S Change at: 821; seg lengths: entry 1, contig 1