No. words: 1729; after pruning: 1689


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:1092)  602  0.47 0.00 0.16  MoSU034F_B06_BF485401Ld04P019A02P019A081F1_046.ab1      268   903 (0)  C MoSU034R_B06_BF485401Ld04P019A02P019A081R1_046.ab1   (0)   826   192 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1    MoSU034F_B06_BF485401Ld04P019A02P019A081F1_046.ab1     1 
  496  C MoSU034R_B06_BF485401Ld04P019A02P019A081R1_046.ab1   598 
  500    MoSU034F_B06_BF485401Ld04P019A02P019A081F1_046.ab1   500 
  516  C MoSU034R_B06_BF485401Ld04P019A02P019A081R1_046.ab1   578 
  520    MoSU034F_B06_BF485401Ld04P019A02P019A081F1_046.ab1   520 
  592  C MoSU034R_B06_BF485401Ld04P019A02P019A081R1_046.ab1   502 
  600    MoSU034F_B06_BF485401Ld04P019A02P019A081F1_046.ab1   600 
  660  C MoSU034R_B06_BF485401Ld04P019A02P019A081R1_046.ab1   434 
Contig length: old 1093, new 1093

Contig length: old 1093, new 1093
New start: 0