No. words: 1580; after pruning: 1512


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:1086)  465  1.01 0.00 0.00  MoSU034F_B05_BF485401Tu02P019A02P019A081F1_045.ab1      368   860 (0)  C MoSU034R_B05_BF485401Tu02P019A02P019A081R1_045.ab1   (0)   720   228 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1    MoSU034F_B05_BF485401Tu02P019A02P019A081F1_045.ab1     1 
  476  C MoSU034R_B05_BF485401Tu02P019A02P019A081R1_045.ab1   612 
  480    MoSU034F_B05_BF485401Tu02P019A02P019A081F1_045.ab1   480 
  484  C MoSU034R_B05_BF485401Tu02P019A02P019A081R1_045.ab1   604 
  493    MoSU034F_B05_BF485401Tu02P019A02P019A081F1_045.ab1   493 
  497  C MoSU034R_B05_BF485401Tu02P019A02P019A081R1_045.ab1   591 
  519    MoSU034F_B05_BF485401Tu02P019A02P019A081F1_045.ab1   519 
  641  C MoSU034R_B05_BF485401Tu02P019A02P019A081R1_045.ab1   447 
  755    MoSU034F_B05_BF485401Tu02P019A02P019A081F1_045.ab1   755 
  759  C MoSU034R_B05_BF485401Tu02P019A02P019A081R1_045.ab1   329 
Contig length: old 1087, new 1087

Contig length: old 1087, new 1087
New start: 0 
S Change at: 214; seg lengths: entry 1, contig 1