No. words: 529; after pruning: 503


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -0.2 -0.2 (1,1:232)  213  0.00 0.43 0.87  MoSU020F_A03_BG274576Ta17P005B01P020C011F1_031.ab1        1   231 (32)  C MoSU020R_A03_BG274576Ta17P005B01P020C011R1_031.ab1   (33)   233     4 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.2       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1  C MoSU020R_A03_BG274576Ta17P005B01P020C011R1_031.ab1   266 
   73    MoSU020F_A03_BG274576Ta17P005B01P020C011F1_031.ab1    39 
   77  C MoSU020R_A03_BG274576Ta17P005B01P020C011R1_031.ab1   190 
  113    MoSU020F_A03_BG274576Ta17P005B01P020C011F1_031.ab1    79 
  121  C MoSU020R_A03_BG274576Ta17P005B01P020C011R1_031.ab1   146 
  145    MoSU020F_A03_BG274576Ta17P005B01P020C011F1_031.ab1   111 
  149  C MoSU020R_A03_BG274576Ta17P005B01P020C011R1_031.ab1   118 
  165    MoSU020F_A03_BG274576Ta17P005B01P020C011F1_031.ab1   131 
  181  C MoSU020R_A03_BG274576Ta17P005B01P020C011R1_031.ab1    86 
  193    MoSU020F_A03_BG274576Ta17P005B01P020C011F1_031.ab1   159 
Contig length: old 296, new 297

Contig length: old 297, new 297
New start: 0