No. words: 1346; after pruning: 1306


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:506)  483  0.79 0.00 0.20  MoSU034F_A12_BG274853Ld02P019H01P019H071F1_096.ab1        1   507 (169)  C MoSU034R_A12_BG274853Ld02P019H01P019H071R1_096.ab1   (164)   506     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C MoSU034R_A12_BG274853Ld02P019H01P019H071R1_096.ab1   670 
  267    MoSU034F_A12_BG274853Ld02P019H01P019H071F1_096.ab1   103 
  279  C MoSU034R_A12_BG274853Ld02P019H01P019H071R1_096.ab1   392 
  351    MoSU034F_A12_BG274853Ld02P019H01P019H071F1_096.ab1   187 
  355  C MoSU034R_A12_BG274853Ld02P019H01P019H071R1_096.ab1   316 
  427    MoSU034F_A12_BG274853Ld02P019H01P019H071F1_096.ab1   263 
  435  C MoSU034R_A12_BG274853Ld02P019H01P019H071R1_096.ab1   236 
  459    MoSU034F_A12_BG274853Ld02P019H01P019H071F1_096.ab1   295 
  463  C MoSU034R_A12_BG274853Ld02P019H01P019H071R1_096.ab1   208 
  616    MoSU034F_A12_BG274853Ld02P019H01P019H071F1_096.ab1   452 
  624  C MoSU034R_A12_BG274853Ld02P019H01P019H071R1_096.ab1    47 
  628    MoSU034F_A12_BG274853Ld02P019H01P019H071F1_096.ab1   464 
Contig length: old 839, new 840

Contig length: old 840, new 840
New start: 0