No. words: 1346; after pruning: 1320


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:506)  490  0.20 0.00 0.20  MoSU034F_D12_BG274853Ld05P019H01P019H071F1_090.ab1        1   507 (168)  C MoSU034R_D12_BG274853Ld05P019H01P019H071R1_090.ab1   (165)   506     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C MoSU034R_D12_BG274853Ld05P019H01P019H071R1_090.ab1   671 
  271    MoSU034F_D12_BG274853Ld05P019H01P019H071F1_090.ab1   106 
  299  C MoSU034R_D12_BG274853Ld05P019H01P019H071R1_090.ab1   373 
  519    MoSU034F_D12_BG274853Ld05P019H01P019H071F1_090.ab1   354 
  523  C MoSU034R_D12_BG274853Ld05P019H01P019H071R1_090.ab1   149 
  555    MoSU034F_D12_BG274853Ld05P019H01P019H071F1_090.ab1   390 
  559  C MoSU034R_D12_BG274853Ld05P019H01P019H071R1_090.ab1   113 
  583    MoSU034F_D12_BG274853Ld05P019H01P019H071F1_090.ab1   418 
  591  C MoSU034R_D12_BG274853Ld05P019H01P019H071R1_090.ab1    81 
  627    MoSU034F_D12_BG274853Ld05P019H01P019H071F1_090.ab1   462 
Contig length: old 839, new 840

Contig length: old 840, new 840
New start: 0