No. words: 1007; after pruning: 981


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:354)  350  0.00 0.00 0.00  MoSU004F_A02_BG604857Ld03P005B02B081F1_005.ab1        1   355 (152)  C MoSU004R_A02_BG604857Ld03P005B02B081R1_005.ab1   (145)   355     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C MoSU004R_A02_BG604857Ld03P005B02B081R1_005.ab1   500 
  211    MoSU004F_A02_BG604857Ld03P005B02B081F1_005.ab1    66 
  219  C MoSU004R_A02_BG604857Ld03P005B02B081R1_005.ab1   282 
  243    MoSU004F_A02_BG604857Ld03P005B02B081F1_005.ab1    98 
  263  C MoSU004R_A02_BG604857Ld03P005B02B081R1_005.ab1   238 
  271    MoSU004F_A02_BG604857Ld03P005B02B081F1_005.ab1   126 
Contig length: old 652, new 652

Contig length: old 652, new 652
New start: 0