No. words: 1010; after pruning: 984


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:371)  358  0.00 0.00 0.54  MoSU004F_C02_BG604857Ld05P005B02B081F1_006.ab1        1   373 (125)  C MoSU004R_C02_BG604857Ld05P005B02B081R1_006.ab1   (141)   371     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C MoSU004R_C02_BG604857Ld05P005B02B081R1_006.ab1   512 
  187    MoSU004F_C02_BG604857Ld05P005B02B081F1_006.ab1    46 
  203  C MoSU004R_C02_BG604857Ld05P005B02B081R1_006.ab1   310 
  207    MoSU004F_C02_BG604857Ld05P005B02B081F1_006.ab1    66 
  259  C MoSU004R_C02_BG604857Ld05P005B02B081R1_006.ab1   254 
  275    MoSU004F_C02_BG604857Ld05P005B02B081F1_006.ab1   134 
  279  C MoSU004R_C02_BG604857Ld05P005B02B081R1_006.ab1   234 
  287    MoSU004F_C02_BG604857Ld05P005B02B081F1_006.ab1   146 
  299  C MoSU004R_C02_BG604857Ld05P005B02B081R1_006.ab1   214 
  303    MoSU004F_C02_BG604857Ld05P005B02B081F1_006.ab1   162 
  423  C MoSU004R_C02_BG604857Ld05P005B02B081R1_006.ab1    90 
  427    MoSU004F_C02_BG604857Ld05P005B02B081F1_006.ab1   286 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0