No. words: 1000; after pruning: 974


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.3 (1,1:367)  356  0.27 0.00 0.27  MoSU002F_E02_BM138650Ld07P005H01H071F1_007.ab1        1   365 (132)  C MoSU002R_E02_BM138650Ld07P005H01H071R1_007.ab1   (136)   367     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C MoSU002R_E02_BM138650Ld07P005H01H071R1_007.ab1   503 
  205    MoSU002F_E02_BM138650Ld07P005H01H071F1_007.ab1    69 
  225  C MoSU002R_E02_BM138650Ld07P005H01H071R1_007.ab1   279 
  241    MoSU002F_E02_BM138650Ld07P005H01H071F1_007.ab1   105 
  245  C MoSU002R_E02_BM138650Ld07P005H01H071R1_007.ab1   259 
  309    MoSU002F_E02_BM138650Ld07P005H01H071F1_007.ab1   173 
  361  C MoSU002R_E02_BM138650Ld07P005H01H071R1_007.ab1   143 
  397    MoSU002F_E02_BM138650Ld07P005H01H071F1_007.ab1   261 
  421  C MoSU002R_E02_BM138650Ld07P005H01H071R1_007.ab1    83 
  425    MoSU002F_E02_BM138650Ld07P005H01H071F1_007.ab1   289 
Contig length: old 632, new 633

Contig length: old 633, new 633
New start: 0