No. words: 563; after pruning: 537


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 2.8 (1,1:242)  221  0.00 0.43 0.43  MoSU023F_E03_BQ160417At01P019B02P019B081F1_023.ab1       12   243 (44)  C MoSU023R_E03_BQ160417At01P019B02P019B081R1_023.ab1   (44)   232     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  110 nodes

 57 str. conn. components

Path
    1  C MoSU023R_E03_BQ160417At01P019B02P019B081R1_023.ab1   276 
   75    MoSU023F_E03_BQ160417At01P019B02P019B081F1_023.ab1    41 
   79  C MoSU023R_E03_BQ160417At01P019B02P019B081R1_023.ab1   198 
   83    MoSU023F_E03_BQ160417At01P019B02P019B081F1_023.ab1    49 
  107  C MoSU023R_E03_BQ160417At01P019B02P019B081R1_023.ab1   170 
  131    MoSU023F_E03_BQ160417At01P019B02P019B081F1_023.ab1    97 
  179  C MoSU023R_E03_BQ160417At01P019B02P019B081R1_023.ab1    98 
  183    MoSU023F_E03_BQ160417At01P019B02P019B081F1_023.ab1   149 
Contig length: old 320, new 321

Contig length: old 321, new 321
New start: 0