No. words: 1488; after pruning: 1462


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.8 (1,1:1328)  138  1.89 0.00 0.63  MoSU010F_F01_BQ170165At02P005F06P005F121F1_005.ab1      476   634 (0)  C MoSU010R_F01_BQ170165At02P005F06P005F121R1_005.ab1   (0)   854   697 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1    MoSU010F_F01_BQ170165At02P005F06P005F121F1_005.ab1     1 
  486  C MoSU010R_F01_BQ170165At02P005F06P005F121R1_005.ab1   844 
  494    MoSU010F_F01_BQ170165At02P005F06P005F121F1_005.ab1   494 
  543  C MoSU010R_F01_BQ170165At02P005F06P005F121R1_005.ab1   788 
  555    MoSU010F_F01_BQ170165At02P005F06P005F121F1_005.ab1   555 
  579  C MoSU010R_F01_BQ170165At02P005F06P005F121R1_005.ab1   752 
  595    MoSU010F_F01_BQ170165At02P005F06P005F121F1_005.ab1   595 
  607  C MoSU010R_F01_BQ170165At02P005F06P005F121R1_005.ab1   724 
  611    MoSU010F_F01_BQ170165At02P005F06P005F121F1_005.ab1   611 
  615  C MoSU010R_F01_BQ170165At02P005F06P005F121R1_005.ab1   716 
Contig length: old 1329, new 1330

Contig length: old 1330, new 1330
New start: 0 
S Change at: 479; seg lengths: entry 1, contig 1