No. words: 1566; after pruning: 1526


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.3 (1,1:1371)  188  0.52 0.00 0.00  MoSU010F_F02_BQ170165Ld08P005F06P005F121F1_006.ab1      621   811 (3)  C MoSU010R_F02_BQ170165Ld08P005F06P005F121R1_006.ab1   (0)   752   562 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1    MoSU010F_F02_BQ170165Ld08P005F06P005F121F1_006.ab1     1 
  652  C MoSU010R_F02_BQ170165Ld08P005F06P005F121R1_006.ab1   721 
  656    MoSU010F_F02_BQ170165Ld08P005F06P005F121F1_006.ab1   656 
  676  C MoSU010R_F02_BQ170165Ld08P005F06P005F121R1_006.ab1   697 
  680    MoSU010F_F02_BQ170165Ld08P005F06P005F121F1_006.ab1   680 
  692  C MoSU010R_F02_BQ170165Ld08P005F06P005F121R1_006.ab1   681 
  708    MoSU010F_F02_BQ170165Ld08P005F06P005F121F1_006.ab1   708 
  712  C MoSU010R_F02_BQ170165Ld08P005F06P005F121R1_006.ab1   661 
Contig length: old 1372, new 1372

Contig length: old 1372, new 1372
New start: 0