No. words: 1041; after pruning: 1015


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.2 (1,1:489)  460  0.21 0.21 0.21  MoSU027F_G11_BQ170165Sn25P005F06P030H091F1_083.ab1        1   487 (48)  C MoSU027R_G11_BQ170165Sn25P005F06P030H091R1_083.ab1   (16)   490     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU027R_G11_BQ170165Sn25P005F06P030H091R1_083.ab1   506 
   26    MoSU027F_G11_BQ170165Sn25P005F06P030H091F1_083.ab1     9 
  254  C MoSU027R_G11_BQ170165Sn25P005F06P030H091R1_083.ab1   253 
  258    MoSU027F_G11_BQ170165Sn25P005F06P030H091F1_083.ab1   241 
  266  C MoSU027R_G11_BQ170165Sn25P005F06P030H091R1_083.ab1   241 
  422    MoSU027F_G11_BQ170165Sn25P005F06P030H091F1_083.ab1   405 
  426  C MoSU027R_G11_BQ170165Sn25P005F06P030H091R1_083.ab1    81 
  446    MoSU027F_G11_BQ170165Sn25P005F06P030H091F1_083.ab1   429 
  484  C MoSU027R_G11_BQ170165Sn25P005F06P030H091R1_083.ab1    24 
  492    MoSU027F_G11_BQ170165Sn25P005F06P030H091F1_083.ab1   475 
Contig length: old 551, new 552

Contig length: old 552, new 552
New start: 0