No. words: 1791; after pruning: 1765


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:970)  793  0.24 0.12 0.12  MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1       86   905 (0)  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   (0)   886    67 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1     1 
  355  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   618 
  359    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1   359 
  367  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   606 
  371    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1   371 
  411  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   562 
  415    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1   415 
  447  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   526 
  451    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1   451 
  479  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   494 
  491    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1   491 
  495  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   478 
  535    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1   535 
  547  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   426 
  595    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1   595 
  599  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   374 
  611    MoSU028F_F09_BQ170165Sn30P030F08P005F121F1_069.ab1   611 
  623  C MoSU028R_F09_BQ170165Sn30P030F08P005F121R1_069.ab1   350 
Contig length: old 971, new 972

Contig length: old 972, new 972
New start: 0