No. words: 1650; after pruning: 1610


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:955)  678  0.43 0.00 0.00  MoSU028F_G09_BQ170165Sn31P030F08P005F121F1_067.ab1      200   893 (0)  C MoSU028R_G09_BQ170165Sn31P030F08P005F121R1_067.ab1   (0)   757    64 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1    MoSU028F_G09_BQ170165Sn31P030F08P005F121F1_067.ab1     1 
  387  C MoSU028R_G09_BQ170165Sn31P030F08P005F121R1_067.ab1   570 
  391    MoSU028F_G09_BQ170165Sn31P030F08P005F121F1_067.ab1   391 
  438  C MoSU028R_G09_BQ170165Sn31P030F08P005F121R1_067.ab1   519 
  442    MoSU028F_G09_BQ170165Sn31P030F08P005F121F1_067.ab1   442 
  458  C MoSU028R_G09_BQ170165Sn31P030F08P005F121R1_067.ab1   499 
  530    MoSU028F_G09_BQ170165Sn31P030F08P005F121F1_067.ab1   530 
  534  C MoSU028R_G09_BQ170165Sn31P030F08P005F121R1_067.ab1   423 
  602    MoSU028F_G09_BQ170165Sn31P030F08P005F121F1_067.ab1   602 
  610  C MoSU028R_G09_BQ170165Sn31P030F08P005F121R1_067.ab1   347 
Contig length: old 956, new 956

Contig length: old 956, new 956
New start: 0