No. words: 1655; after pruning: 1629


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:988)  645  0.15 0.15 0.15  MoSU026F_D08_BQ170165Ta12P030F08P005F121F1_058.ab1      201   866 (0)  C MoSU026R_D08_BQ170165Ta12P030F08P005F121R1_058.ab1   (0)   789   124 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1    MoSU026F_D08_BQ170165Ta12P030F08P005F121F1_058.ab1     1 
  415  C MoSU026R_D08_BQ170165Ta12P030F08P005F121R1_058.ab1   575 
  427    MoSU026F_D08_BQ170165Ta12P030F08P005F121F1_058.ab1   427 
  467  C MoSU026R_D08_BQ170165Ta12P030F08P005F121R1_058.ab1   523 
  475    MoSU026F_D08_BQ170165Ta12P030F08P005F121F1_058.ab1   475 
  515  C MoSU026R_D08_BQ170165Ta12P030F08P005F121R1_058.ab1   475 
  555    MoSU026F_D08_BQ170165Ta12P030F08P005F121F1_058.ab1   555 
  563  C MoSU026R_D08_BQ170165Ta12P030F08P005F121R1_058.ab1   427 
  655    MoSU026F_D08_BQ170165Ta12P030F08P005F121F1_058.ab1   655 
  667  C MoSU026R_D08_BQ170165Ta12P030F08P005F121R1_058.ab1   323 
Contig length: old 989, new 989

Contig length: old 989, new 989
New start: 0