No. words: 1388; after pruning: 1362


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.4 (1,1:650)  606  0.93 0.15 0.00  MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1        1   648 (47)  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1   (41)   652     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1   693 
   56    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1    14 
   64  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1   630 
  360    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   318 
  364  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1   330 
  536    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   494 
  540  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1   154 
  544    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   502 
  552  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1   142 
  600    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   558 
  604  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1    90 
  608    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   566 
  612  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1    82 
  632    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   590 
  640  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1    54 
  644    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   602 
  648  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1    46 
  656    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   614 
  672  C MoSU027R_C10_BQ170165Ta13P005F06P030H091R1_076.ab1    22 
  676    MoSU027F_C10_BQ170165Ta13P005F06P030H091F1_076.ab1   634 
Contig length: old 737, new 737

Contig length: old 737, new 737
New start: 0