No. words: 1799; after pruning: 1759


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:987)  790  0.49 0.00 0.00  MoSU026F_D09_BQ170165Ta20P030F08P005F121F1_073.ab1      123   933 (0)  C MoSU026R_D09_BQ170165Ta20P030F08P005F121R1_073.ab1   (0)   866    56 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1    MoSU026F_D09_BQ170165Ta20P030F08P005F121F1_073.ab1     1 
  368  C MoSU026R_D09_BQ170165Ta20P030F08P005F121R1_073.ab1   621 
  372    MoSU026F_D09_BQ170165Ta20P030F08P005F121F1_073.ab1   372 
  392  C MoSU026R_D09_BQ170165Ta20P030F08P005F121R1_073.ab1   597 
  396    MoSU026F_D09_BQ170165Ta20P030F08P005F121F1_073.ab1   396 
  400  C MoSU026R_D09_BQ170165Ta20P030F08P005F121R1_073.ab1   589 
  452    MoSU026F_D09_BQ170165Ta20P030F08P005F121F1_073.ab1   452 
  460  C MoSU026R_D09_BQ170165Ta20P030F08P005F121R1_073.ab1   529 
  604    MoSU026F_D09_BQ170165Ta20P030F08P005F121F1_073.ab1   604 
  612  C MoSU026R_D09_BQ170165Ta20P030F08P005F121R1_073.ab1   377 
Contig length: old 988, new 988

Contig length: old 988, new 988
New start: 0