No. words: 1217; after pruning: 1163


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 3.0 (1,1:1023)  173  2.11 0.53 0.00  MoSU027F_E03_BQ170165Ta21P030G08P005F121F1_023.ab1      777   966 (2)  C MoSU027R_E03_BQ170165Ta21P030G08P005F121R1_023.ab1   (0)   249    59 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    MoSU027F_E03_BQ170165Ta21P030G08P005F121F1_023.ab1     1 
  799  C MoSU027R_E03_BQ170165Ta21P030G08P005F121R1_023.ab1   227 
  926    MoSU027F_E03_BQ170165Ta21P030G08P005F121F1_023.ab1   926 
  934  C MoSU027R_E03_BQ170165Ta21P030G08P005F121R1_023.ab1    92 
Contig length: old 1024, new 1025

Contig length: old 1025, new 1025
New start: 0 
S Change at: 787; seg lengths: entry 1, contig 1
S Change at: 814; seg lengths: entry 1, contig 1