No. words: 1686; after pruning: 1660


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:963)  709  0.00 0.00 0.00  MoSU026F_C07_BQ170165Td03P030F08P005F121F1_059.ab1      101   822 (0)  C MoSU026R_C07_BQ170165Td03P030F08P005F121R1_059.ab1   (0)   864   143 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1    MoSU026F_C07_BQ170165Td03P030F08P005F121F1_059.ab1     1 
  360  C MoSU026R_C07_BQ170165Td03P030F08P005F121R1_059.ab1   605 
  364    MoSU026F_C07_BQ170165Td03P030F08P005F121F1_059.ab1   364 
  384  C MoSU026R_C07_BQ170165Td03P030F08P005F121R1_059.ab1   581 
  388    MoSU026F_C07_BQ170165Td03P030F08P005F121F1_059.ab1   388 
  396  C MoSU026R_C07_BQ170165Td03P030F08P005F121R1_059.ab1   569 
  416    MoSU026F_C07_BQ170165Td03P030F08P005F121F1_059.ab1   416 
  420  C MoSU026R_C07_BQ170165Td03P030F08P005F121R1_059.ab1   545 
  424    MoSU026F_C07_BQ170165Td03P030F08P005F121F1_059.ab1   424 
  432  C MoSU026R_C07_BQ170165Td03P030F08P005F121R1_059.ab1   533 
  448    MoSU026F_C07_BQ170165Td03P030F08P005F121F1_059.ab1   448 
  452  C MoSU026R_C07_BQ170165Td03P030F08P005F121R1_059.ab1   513 
  552    MoSU026F_C07_BQ170165Td03P030F08P005F121F1_059.ab1   552 
  556  C MoSU026R_C07_BQ170165Td03P030F08P005F121R1_059.ab1   409 
Contig length: old 964, new 964

Contig length: old 964, new 964
New start: 0