No. words: 1464; after pruning: 1424


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 1.7 (1,1:1286)  163  0.58 0.58 0.00  MoSU010F_A01_BQ170165Tu01P005F06P005F121F1_015.ab1      565   736 (0)  C MoSU010R_A01_BQ170165Tu01P005F06P005F121R1_015.ab1   (4)   724   552 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    MoSU010F_A01_BQ170165Tu01P005F06P005F121F1_015.ab1     1 
  634  C MoSU010R_A01_BQ170165Tu01P005F06P005F121R1_015.ab1   654 
  638    MoSU010F_A01_BQ170165Tu01P005F06P005F121F1_015.ab1   638 
  650  C MoSU010R_A01_BQ170165Tu01P005F06P005F121R1_015.ab1   638 
  670    MoSU010F_A01_BQ170165Tu01P005F06P005F121F1_015.ab1   670 
  682  C MoSU010R_A01_BQ170165Tu01P005F06P005F121R1_015.ab1   606 
Contig length: old 1287, new 1287

Contig length: old 1287, new 1287
New start: 0 
S Change at: 713; seg lengths: entry 1, contig 1