No. words: 1412; after pruning: 1386


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:538)  523  0.00 0.19 0.00  MoSU024F_A06_CD373508Ld03P019E03P019E091F1_048.ab1        1   539 (155)  C MoSU024R_A06_CD373508Ld03P019E03P019E091R1_048.ab1   (178)   540     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C MoSU024R_A06_CD373508Ld03P019E03P019E091R1_048.ab1   718 
  216    MoSU024F_A06_CD373508Ld03P019E03P019E091F1_048.ab1    37 
  220  C MoSU024R_A06_CD373508Ld03P019E03P019E091R1_048.ab1   499 
  264    MoSU024F_A06_CD373508Ld03P019E03P019E091F1_048.ab1    85 
  292  C MoSU024R_A06_CD373508Ld03P019E03P019E091R1_048.ab1   427 
  296    MoSU024F_A06_CD373508Ld03P019E03P019E091F1_048.ab1   117 
  308  C MoSU024R_A06_CD373508Ld03P019E03P019E091R1_048.ab1   411 
  428    MoSU024F_A06_CD373508Ld03P019E03P019E091F1_048.ab1   249 
Contig length: old 873, new 873

Contig length: old 873, new 873
New start: 0