No. words: 1423; after pruning: 1397


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:543)  529  0.00 0.18 0.00  MoSU024F_B06_CD373508Ld04P019E03P019E091F1_046.ab1        1   544 (166)  C MoSU024R_B06_CD373508Ld04P019E03P019E091R1_046.ab1   (168)   545     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C MoSU024R_B06_CD373508Ld04P019E03P019E091R1_046.ab1   713 
  222    MoSU024F_B06_CD373508Ld04P019E03P019E091F1_046.ab1    53 
  226  C MoSU024R_B06_CD373508Ld04P019E03P019E091R1_046.ab1   488 
  466    MoSU024F_B06_CD373508Ld04P019E03P019E091F1_046.ab1   297 
  474  C MoSU024R_B06_CD373508Ld04P019E03P019E091R1_046.ab1   240 
  510    MoSU024F_B06_CD373508Ld04P019E03P019E091F1_046.ab1   341 
  590  C MoSU024R_B06_CD373508Ld04P019E03P019E091R1_046.ab1   124 
  602    MoSU024F_B06_CD373508Ld04P019E03P019E091F1_046.ab1   433 
Contig length: old 879, new 879

Contig length: old 879, new 879
New start: 0