No. words: 1434; after pruning: 1408


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:547)  532  0.00 0.18 0.00  MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1        1   548 (155)  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1   (182)   549     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1   731 
  216    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1    33 
  228  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1   504 
  248    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1    65 
  252  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1   480 
  268    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1    85 
  296  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1   436 
  344    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1   161 
  404  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1   328 
  420    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1   237 
  432  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1   300 
  484    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1   301 
  632  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1   100 
  656    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1   473 
  664  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1    68 
  676    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1   493 
  684  C MoSU024R_C06_CD373508Ld05P019E03P019E091R1_044.ab1    48 
  688    MoSU024F_C06_CD373508Ld05P019E03P019E091F1_044.ab1   505 
Contig length: old 886, new 886

Contig length: old 886, new 886
New start: 0