No. words: 1420; after pruning: 1394


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:547)  532  0.00 0.18 0.00  MoSU024F_D06_CD373508Ld06P019E03P019E091F1_042.ab1        1   548 (144)  C MoSU024R_D06_CD373508Ld06P019E03P019E091R1_042.ab1   (179)   549     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU024R_D06_CD373508Ld06P019E03P019E091R1_042.ab1   728 
  217    MoSU024F_D06_CD373508Ld06P019E03P019E091F1_042.ab1    37 
  225  C MoSU024R_D06_CD373508Ld06P019E03P019E091R1_042.ab1   504 
  245    MoSU024F_D06_CD373508Ld06P019E03P019E091F1_042.ab1    65 
  253  C MoSU024R_D06_CD373508Ld06P019E03P019E091R1_042.ab1   476 
  265    MoSU024F_D06_CD373508Ld06P019E03P019E091F1_042.ab1    85 
  309  C MoSU024R_D06_CD373508Ld06P019E03P019E091R1_042.ab1   420 
  321    MoSU024F_D06_CD373508Ld06P019E03P019E091F1_042.ab1   141 
  333  C MoSU024R_D06_CD373508Ld06P019E03P019E091R1_042.ab1   396 
  377    MoSU024F_D06_CD373508Ld06P019E03P019E091F1_042.ab1   197 
Contig length: old 872, new 872

Contig length: old 872, new 872
New start: 0