No. words: 1413; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:539)  524  0.00 0.19 0.00  MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1        1   540 (154)  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   (178)   541     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   719 
  216    MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1    37 
  224  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   496 
  244    MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1    65 
  248  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   472 
  264    MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1    85 
  312  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   408 
  328    MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1   149 
  332  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   388 
  344    MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1   165 
  360  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   360 
  376    MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1   197 
  388  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   332 
  392    MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1   213 
  416  C MoSU024R_F06_CD373508Ld08P019E03P019E091R1_038.ab1   304 
  420    MoSU024F_F06_CD373508Ld08P019E03P019E091F1_038.ab1   241 
Contig length: old 873, new 873

Contig length: old 873, new 873
New start: 0