No. words: 1302; after pruning: 1276


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.2 (1,1:601)  578  0.33 0.00 0.00  MoSU022F_C11_CD454041As01P005H06P005H121F1_091.ab1        2   602 (43)  C MoSU022R_C11_CD454041As01P005H06P005H121R1_091.ab1   (56)   601     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C MoSU022R_C11_CD454041As01P005H06P005H121R1_091.ab1   657 
  550    MoSU022F_C11_CD454041As01P005H06P005H121F1_091.ab1   495 
  554  C MoSU022R_C11_CD454041As01P005H06P005H121R1_091.ab1   104 
  566    MoSU022F_C11_CD454041As01P005H06P005H121F1_091.ab1   511 
  570  C MoSU022R_C11_CD454041As01P005H06P005H121R1_091.ab1    88 
  646    MoSU022F_C11_CD454041As01P005H06P005H121F1_091.ab1   591 
  650  C MoSU022R_C11_CD454041As01P005H06P005H121R1_091.ab1     8 
  654    MoSU022F_C11_CD454041As01P005H06P005H121F1_091.ab1   599 
Contig length: old 700, new 700

Contig length: old 700, new 700
New start: 0