No. words: 1311; after pruning: 1285


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:612)  592  0.00 0.16 0.00  MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1        1   613 (44)  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1   (40)   614     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1   654 
   65    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1    24 
   69  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1   586 
   77    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1    36 
   81  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1   574 
   85    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1    44 
   89  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1   566 
   93    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1    52 
   97  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1   558 
  173    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1   132 
  177  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1   478 
  545    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1   504 
  553  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1   102 
  561    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1   520 
  569  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1    86 
  629    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1   588 
  633  C MoSU022R_D11_CD454041As02P005H06P005H121R1_089.ab1    22 
  649    MoSU022F_D11_CD454041As02P005H06P005H121F1_089.ab1   608 
Contig length: old 698, new 698

Contig length: old 698, new 698
New start: 0