No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:613)  587  0.16 0.33 0.00  MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1        1   613 (41)  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1   (44)   615     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1   659 
   68    MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1    22 
   80  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1   580 
   84    MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1    38 
   88  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1   572 
  116    MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1    70 
  120  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1   540 
  140    MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1    94 
  144  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1   516 
  172    MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1   126 
  180  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1   480 
  552    MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1   506 
  556  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1   104 
  620    MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1   574 
  624  C MoSU022R_E11_CD454041At01P005H06P005H121R1_087.ab1    36 
  648    MoSU022F_E11_CD454041At01P005H06P005H121F1_087.ab1   602 
Contig length: old 699, new 700

Contig length: old 700, new 700
New start: 0 
S Change at: 655; seg lengths: entry 1, contig 1