No. words: 1319; after pruning: 1293


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:612)  594  0.00 0.16 0.00  MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1        1   613 (44)  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1   (48)   614     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1   662 
   70    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1    21 
   74  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1   589 
   90    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1    41 
   94  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1   569 
  182    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   133 
  186  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1   477 
  534    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   485 
  538  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1   125 
  554    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   505 
  562  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1   101 
  570    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   521 
  582  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1    81 
  602    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   553 
  606  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1    57 
  622    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   573 
  626  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1    37 
  642    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   593 
  646  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1    17 
  650    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   601 
  654  C MoSU022R_F11_CD454041At02P005H06P005H121R1_085.ab1     9 
  658    MoSU022F_F11_CD454041At02P005H06P005H121F1_085.ab1   609 
Contig length: old 706, new 706

Contig length: old 706, new 706
New start: 0