No. words: 1570; after pruning: 1544


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:629)  604  0.16 0.00 0.16  MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1        1   630 (155)  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   (156)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   785 
  168    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1    12 
  172  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   614 
  176    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1    20 
  188  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   598 
  206    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1    50 
  230  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   556 
  234    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1    78 
  238  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   548 
  246    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1    90 
  254  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   532 
  258    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1   102 
  266  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   520 
  270    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1   114 
  274  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   512 
  282    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1   126 
  294  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   492 
  666    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1   510 
  674  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   112 
  682    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1   526 
  686  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1   100 
  750    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1   594 
  754  C MoSU022R_A12_CD454041Ld02P005H06P005H121R1_096.ab1    32 
  762    MoSU022F_A12_CD454041Ld02P005H06P005H121F1_096.ab1   606 
Contig length: old 940, new 941

Contig length: old 941, new 941
New start: 0