No. words: 1563; after pruning: 1537


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:621)  594  0.00 0.16 0.16  MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1        1   622 (144)  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   (175)   622     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   797 
  189    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1    13 
  193  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   605 
  209    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1    33 
  233  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   565 
  237    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1    61 
  249  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   549 
  257    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1    81 
  265  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   533 
  269    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1    93 
  289  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   509 
  293    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1   117 
  305  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   493 
  673    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1   497 
  677  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1   121 
  741    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1   565 
  749  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1    49 
  773    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1   597 
  777  C MoSU022R_C12_CD454041Ld04P005H06P005H121R1_092.ab1    21 
  781    MoSU022F_C12_CD454041Ld04P005H06P005H121F1_092.ab1   605 
Contig length: old 941, new 942

Contig length: old 942, new 942
New start: 0