No. words: 1570; after pruning: 1544


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:631)  609  0.00 0.00 0.16  MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1        1   632 (155)  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   (152)   631     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   783 
  200    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1    48 
  228  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   556 
  232    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1    80 
  236  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   548 
  244    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1    92 
  252  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   532 
  260    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1   108 
  272  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   512 
  280    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1   128 
  292  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   492 
  664    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1   512 
  668  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   116 
  680    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1   528 
  684  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1   100 
  748    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1   596 
  752  C MoSU022R_D12_CD454041Ld05P005H06P005H121R1_090.ab1    32 
  768    MoSU022F_D12_CD454041Ld05P005H06P005H121F1_090.ab1   616 
Contig length: old 938, new 939

Contig length: old 939, new 939
New start: 0