No. words: 1127; after pruning: 1101


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   40    0.0 1.8 (1,1:608)  269  3.23 0.32 0.00  MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1      300   609 (167)  C MoSU022R_F12_CD454041Ld07P005H06P005H121R1_086.ab1   (40)   311     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
40       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1    MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1     1 
  469  C MoSU022R_F12_CD454041Ld07P005H06P005H121R1_086.ab1   142 
  477    MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1   477 
  493  C MoSU022R_F12_CD454041Ld07P005H06P005H121R1_086.ab1   118 
  497    MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1   497 
  513  C MoSU022R_F12_CD454041Ld07P005H06P005H121R1_086.ab1    98 
  517    MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1   517 
  521  C MoSU022R_F12_CD454041Ld07P005H06P005H121R1_086.ab1    90 
  525    MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1   525 
  529  C MoSU022R_F12_CD454041Ld07P005H06P005H121R1_086.ab1    82 
  541    MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1   541 
  545  C MoSU022R_F12_CD454041Ld07P005H06P005H121R1_086.ab1    66 
  561    MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1   561 
  575  C MoSU022R_F12_CD454041Ld07P005H06P005H121R1_086.ab1    35 
  595    MoSU022F_F12_CD454041Ld07P005H06P005H121F1_086.ab1   595 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0