No. words: 1077; after pruning: 1051


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.4 (1,1:400)  377  0.00 0.00 0.25  MoSU004F_G07_CD454870Ld01P005E06E121F1_052.ab1        5   401 (139)  C MoSU004R_G07_CD454870Ld01P005E06E121R1_052.ab1   (141)   396     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C MoSU004R_G07_CD454870Ld01P005E06E121R1_052.ab1   537 
  301    MoSU004F_G07_CD454870Ld01P005E06E121F1_052.ab1   164 
  305  C MoSU004R_G07_CD454870Ld01P005E06E121R1_052.ab1   233 
  317    MoSU004F_G07_CD454870Ld01P005E06E121F1_052.ab1   180 
  333  C MoSU004R_G07_CD454870Ld01P005E06E121R1_052.ab1   205 
  361    MoSU004F_G07_CD454870Ld01P005E06E121F1_052.ab1   224 
  433  C MoSU004R_G07_CD454870Ld01P005E06E121R1_052.ab1   105 
  437    MoSU004F_G07_CD454870Ld01P005E06E121F1_052.ab1   300 
Contig length: old 676, new 677

Contig length: old 677, new 677
New start: 0